[English] 日本語
EMN search
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 234 items for (author: de & simone & a)

EMDB-19184:
Late alpha-Synuclein fibril structure from liquid-liquid phase separations.
Method: helical / : De Simone A, Barritt JD, Chen S, Cascella R, Cecchi C, Bigi A, Jarvis JA, Chiti F, Dobson CM, Fusco G

PDB-8ri9:
Late alpha-Synuclein fibril structure from liquid-liquid phase separations.
Method: helical / : De Simone A, Barritt JD, Chen S, Cascella R, Cecchi C, Bigi A, Jarvis JA, Chiti F, Dobson CM, Fusco G

EMDB-40603:
GPR161 Gs heterotrimer
Method: single particle / : Hoppe N, Manglik A, Harrison S

PDB-8smv:
GPR161 Gs heterotrimer
Method: single particle / : Hoppe N, Manglik A, Harrison S

EMDB-16229:
Cryo-EM structure of the bacterial replication origin opening basal unwinding system
Method: single particle / : Pelliciari S, Bodet-Lefevre S, Murray H, Ilangovan A

PDB-8btg:
Cryo-EM structure of the bacterial replication origin opening basal unwinding system
Method: single particle / : Pelliciari S, Bodet-Lefevre S, Murray H, Ilangovan A

EMDB-16328:
Outer membrane attachment porin OmpM1 from Veillonella parvula
Method: single particle / : Silale A, van den Berg B

EMDB-16332:
Outer membrane attachment porin OmpM1 from Veillonella parvula, native
Method: single particle / : Silale A, van den Berg B

EMDB-16333:
Outer membrane attachment porin OmpM1 from Veillonella parvula, C3 symmetry
Method: single particle / : Silale A, van den Berg B

PDB-8bym:
Outer membrane attachment porin OmpM1 from Veillonella parvula
Method: single particle / : Silale A, van den Berg B

PDB-8bys:
Outer membrane attachment porin OmpM1 from Veillonella parvula, native
Method: single particle / : Silale A, van den Berg B

PDB-8byt:
Outer membrane attachment porin OmpM1 from Veillonella parvula, C3 symmetry
Method: single particle / : Silale A, van den Berg B

EMDB-16890:
Iron Nitrogenase Complex from Rhodobacter capsulatus
Method: single particle / : Schmidt FV, Schulz L, Zarzycki J, Prinz S, Erb TJ, Rebelein JG

EMDB-17583:
CHAPSO treated partial catalytic component (comprising only AnfD & AnfK, lacking AnfG and FeFeco) of iron nitrogenase from Rhodobacter capsulatus
Method: single particle / : Schmidt FV, Schulz L, Zarzycki J, Prinz S, Erb TJ, Rebelein JG

PDB-8oie:
Iron Nitrogenase Complex from Rhodobacter capsulatus
Method: single particle / : Schmidt FV, Schulz L, Zarzycki J, Prinz S, Erb TJ, Rebelein JG

PDB-8pbb:
CHAPSO treated partial catalytic component (comprising only AnfD & AnfK, lacking AnfG and FeFeco) of iron nitrogenase from Rhodobacter capsulatus
Method: single particle / : Schmidt FV, Schulz L, Zarzycki J, Prinz S, Erb TJ, Rebelein JG

EMDB-28013:
Cryo-EM structure of the Glutaminase C core filament (fGAC)
Method: single particle / : Ambrosio AL, Dias SM, Quesnay JE, Portugal RV, Cassago A, van Heel MG, Islam Z, Rodrigues CT

PDB-8ec6:
Cryo-EM structure of the Glutaminase C core filament (fGAC)
Method: single particle / : Ambrosio AL, Dias SM, Quesnay JE, Portugal RV, Cassago A, van Heel MG, Islam Z, Rodrigues CT

EMDB-40789:
BAP1/ASXL1 bound to the H2AK119Ub Nucleosome
Method: single particle / : Thomas JF, Valencia-Sanchez MI, Armache KJ

EMDB-40790:
Map focused on acidic patch BAP1/ASXL1 bound to the H2AK119Ub Nucleosome
Method: single particle / : Thomas JF, Valencia-Sanchez MI

EMDB-40791:
Overall map of BAP1/ASXL1 bound to the H2AK119Ub Nucleosome
Method: single particle / : Thomas JF, Valencia-Sanchez MI

PDB-8svf:
BAP1/ASXL1 bound to the H2AK119Ub Nucleosome
Method: single particle / : Thomas JF, Valencia-Sanchez MI, Armache KJ

EMDB-17756:
Structure of the murine trace amine-associated receptor TAAR7f bound to N,N-dimethylcyclohexylamine (DMCH) in complex with mini-Gs trimeric G protein
Method: single particle / : Gusach A, Lee Y, Edwards PC, Huang F, Weyand SN, Tate CG

PDB-8pm2:
Structure of the murine trace amine-associated receptor TAAR7f bound to N,N-dimethylcyclohexylamine (DMCH) in complex with mini-Gs trimeric G protein
Method: single particle / : Gusach A, Lee Y, Edwards PC, Huang F, Weyand SN, Tate CG

EMDB-27121:
CryoEM structure of human orphan GPCR GPR179 in complex with extracellular matrix protein pikachurin
Method: single particle / : Patil DN, Martemyanov KA

PDB-8d1b:
CryoEM structure of human orphan GPCR GPR179 in complex with extracellular matrix protein pikachurin
Method: single particle / : Patil DN, Martemyanov KA

EMDB-40184:
Structure of the Spizellomyces punctatus Fanzor (SpuFz) in complex with omega RNA and target DNA
Method: single particle / : Xu P, Saito M, Zhang F

PDB-8gkh:
Structure of the Spizellomyces punctatus Fanzor (SpuFz) in complex with omega RNA and target DNA
Method: single particle / : Xu P, Saito M, Zhang F

EMDB-17540:
Cryo-EM structure of full-length human UBR5 (homotetramer)
Method: single particle / : Aguirre JD, Kater L, Kempf G, Cavadini S, Thoma NH

PDB-8p83:
Cryo-EM structure of full-length human UBR5 (homotetramer)
Method: single particle / : Aguirre JD, Kater L, Kempf G, Cavadini S, Thoma NH

EMDB-17542:
Negative stain map of UBR5 (dimer) in complex with RARA/RXRA
Method: single particle / : Aguirre JD, Cavadini S, Kempf G, Kater L, Thoma NH

EMDB-16376:
CryoEM structure of a tungsten-containing aldehyde oxidoreductase from Aromatoleum aromaticum
Method: single particle / : Winiarska A, Ramirez-Amador F, Hege D, Gemmecker Y, Prinz S, Hochberg G, Heider J, Szaleniec M, Schuller JM

PDB-8c0z:
CryoEM structure of a tungsten-containing aldehyde oxidoreductase from Aromatoleum aromaticum
Method: single particle / : Winiarska A, Ramirez-Amador F, Hege D, Gemmecker Y, Prinz S, Hochberg G, Heider J, Szaleniec M, Schuller JM

EMDB-17154:
Cryo-EM structure of CLOCK-BMAL1 bound to a nucleosomal E-box at position SHL+5.8 (consensus and constituent map 1)
Method: single particle / : Stoos L, Michael AK, Kempf G, Cavadini S, Thoma NH

EMDB-17155:
Cryo-EM structure of CLOCK-BMAL1 bound to a nucleosomal E-box at position SHL-6.2 (DNA conformation 1)
Method: single particle / : Michael AK, Stoos L, Kempf G, Cavadini S, Thoma NH

EMDB-17156:
Cryo-EM structure of CLOCK-BMAL1 bound to a nucleosomal E-box at position SHL-6.2 (DNA conformation 2)
Method: single particle / : Michael AK, Stoos L, Kempf G, Cavadini S, Thoma NH

EMDB-17157:
Cryo-EM structure of CLOCK-BMAL1 bound to a nucleosomal E-box at position SHL+5.8 (composite map)
Method: single particle / : Stoos L, Michael AK, Kempf G, Cavadini S, Thoma NH

EMDB-17158:
Cryo-EM structure of CLOCK-BMAL1 bound to a nucleosomal E-box at position SHL+5.8 (constituent map 2 from additional focus classification on PAS domains)
Method: single particle / : Stoos L, Michael AK, Kempf G, Cavadini S, Thoma NH

EMDB-17159:
Cryo-EM map of MYC-MAX-OCT4-LIN28 complex
Method: single particle / : Michael AK, Kempf G, Cavadini S, Thoma NH

EMDB-17160:
Cryo-EM structure of CLOCK-BMAL1 bound to the native Por enhancer nucleosome (map 2, additional 3D classification and flexible refinement)
Method: single particle / : Michael AK, Stoos L, Kempf G, Cavadini S, Thoma N

EMDB-17161:
Cryo-EM structure of CLOCK-BMAL1 bound to the native Por enhancer nucleosome (map 1)
Method: single particle / : Michael AK, Stoos L, Cavadini S, Kempf G

EMDB-17162:
MAX-MAX bound to a nucleosome at SHL+5.1 and SHL-6.9.
Method: single particle / : Stoos L, Kempf G, Kater L, Thoma NH

EMDB-17183:
OCT4 and MYC-MAX co-bound to a nucleosome
Method: single particle / : Michael AK, Stoos L, Kempf G, Cavadini S, Thoma N

EMDB-17184:
MYC-MAX bound to a nucleosome at SHL+5.8
Method: single particle / : Stoos L, Michael AK, Kempf G, Kater L, Cavadini S, Thoma N

PDB-8osj:
Cryo-EM structure of CLOCK-BMAL1 bound to a nucleosomal E-box at position SHL-6.2 (DNA conformation 1)
Method: single particle / : Michael AK, Stoos L, Kempf G, Cavadini S, Thoma NH

PDB-8osk:
Cryo-EM structure of CLOCK-BMAL1 bound to a nucleosomal E-box at position SHL+5.8 (composite map)
Method: single particle / : Stoos L, Michael AK, Kempf G, Cavadini S, Thoma NH

PDB-8osl:
Cryo-EM structure of CLOCK-BMAL1 bound to the native Por enhancer nucleosome (map 2, additional 3D classification and flexible refinement)
Method: single particle / : Michael AK, Stoos L, Kempf G, Cavadini S, Thoma N

PDB-8ots:
OCT4 and MYC-MAX co-bound to a nucleosome
Method: single particle / : Michael AK, Stoos L, Kempf G, Cavadini S, Thoma N

PDB-8ott:
MYC-MAX bound to a nucleosome at SHL+5.8
Method: single particle / : Stoos L, Michael AK, Kempf G, Kater L, Cavadini S, Thoma N

EMDB-15295:
African cichlid nackednavirus capsid at pH 7.5
Method: single particle / : Pfister S, Rabl J, Boehringer D, Meier BH

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more